I have a very similar problem: 2L head on a 1800 block. The timing belt runs against the back flange on the intake pulley and thus grinds on the protruding part of the head. I've checked that I have an A on the intake and S on the exhaust and aux shaft. The timing belt hangs less than 1 mm over the back edge of the aux shaft and tensioner.
I feel like I have two options: putting a spacer behind the intake pulley or changing the aux pulley to a type with flange on the back side, for instance the current intake pulley. Does anyone have experience with the last option? I could reuse my current pulleys but the timing marks would be off.



Thanks,
Toon